diff --git a/.agents/specs/REMOTE-1063-docs-setup-command-openapi.md b/.agents/specs/REMOTE-1063-docs-setup-command-openapi.md
new file mode 100644
index 000000000..be8f7c0d9
--- /dev/null
+++ b/.agents/specs/REMOTE-1063-docs-setup-command-openapi.md
@@ -0,0 +1,217 @@
+*Spec: Docs OpenAPI — expose precise setup-command operations (REMOTE-1063, docs repo)*
+
+== PRODUCT ==
+*Summary:* After the warp-server canonical public API adds precise setup-command
+update operations for cloud environments, the generated docs OpenAPI at
+`developers/agent-api-openapi.yaml` must mirror those operations — paths,
+parameters, request/response shapes, and index semantics — so the Scalar API
+reference at `docs.warp.dev/api` and the raw `docs.warp.dev/openapi.json`
+document them. This spec covers *only* the docs repo's generated OpenAPI file
+and the sync mechanics that keep it aligned to the warp-server canonical
+contract; the warp-server spec owns the canonical contract shape and is the
+source of truth.
+
+*Key design choices:*
+1. **Mirror, don't hand-author.** `developers/agent-api-openapi.yaml` is a
+   generated curated subset of `warp-server/public_api/openapi.yaml`
+   (`sync-openapi-spec` skill → `scripts/sync_openapi.py`). The docs change is
+   produced by running the existing sync tool against an updated canonical
+   source, not by editing the docs YAML by hand. This keeps the two specs
+   structurally identical for the included surface.
+2. **REST-only public contract.** The existing public environment surface is
+   REST (`GET /agent/environments`); the OpenAPI spec and the Scalar reference
+   are REST. The new precise setup-command operations are REST endpoints
+   committed to `warp-server/public_api/openapi.yaml` and flow through the sync
+   to docs. GraphQL remains internal and is not part of the documented public
+   contract (see Design alternatives).
+3. **Index semantics live in the contract, not just the CLI.** The documented
+   operations carry zero-based index parameters with explicit append-at-length
+   and out-of-range rules, so the CLI, server, and docs all agree on the same
+   shape (the cross-repo alignment requirement).
+
+*Behavior* (numbered, testable invariants from the docs consumer's view):
+1. The Scalar reference at `docs.warp.dev/api` lists the new precise
+   setup-command operation(s) for cloud environments alongside the existing
+   `GET /agent/environments` operation, with HTTP method, path, parameters,
+   request body, and response codes rendered.
+2. The documented surface exposes the setup-commands sub-resource as
+multiple verbs under `/agent/environments/{uid}/setup-commands`: `GET` (list),
+`PUT` (replace / clear-and-rebuild the whole list), `POST` (add — append when
+index omitted, insert at `0..=len`), `PATCH /{index}` (edit one command by
+index without resending the rest), `DELETE /{index}` (remove one by index),
+and `DELETE` (clear all). The index-based ops (`POST` insert,
+`PATCH /{index}`, `DELETE /{index}`) address a single command by index
+without the caller resending the unchanged full list.
+3. Index parameters are documented as **zero-based**; a `POST` insert at
+`index == length` appends (preserves order); an edit (`PATCH /{index}`) or
+remove (`DELETE /{index}`) whose index is out of range (`[0, length)`) is
+documented as a `404`; a malformed/bad index (e.g. non-integer, negative) is
+documented as a `400`.
+4. Duplicate setup commands (same text, different positions) are addressable by
+   index in the documented operations; the docs do not require command text to
+   be unique.
+5. The existing `GET /agent/environments` operation and the
+   `CloudEnvironmentConfig` schema (including its `setup_commands` array field)
+   remain present and unchanged in the regenerated docs file — the change is
+   purely additive for the public surface.
+6. `docs.warp.dev/openapi.json` (served from the same source via
+   `src/pages/api.astro`) reflects the new operations after deploy.
+
+== TECH ==
+*Context:* how the docs OpenAPI surface works today (commit-pinned):
+- `developers/agent-api-openapi.yaml:1155` (@ `aca5ecce`) — the only environment
+  path today: `GET /agent/environments` (`operationId: listEnvironments`, tag
+  `agent`, `bearerAuth`, `sort_by` query param). Mirrors the canonical.
+- `developers/agent-api-openapi.yaml:2908` — `CloudEnvironmentConfig` schema;
+  `setup_commands` at `:2927` is `array of string` ("Shell commands to run
+  during environment setup"). No setup-command CRUD operations exist.
+- `src/pages/api.astro:16` reads `developers/agent-api-openapi.yaml` and feeds
+  Scalar; `:213` links the raw `openapi.json`. So one YAML file powers both the
+  rendered reference and the JSON download.
+- Canonical source of truth: `warp-server/public_api/openapi.yaml:3980`
+  (`GET /agent/environments`) and `:7774` (`CloudEnvironmentConfig`,
+  `setup_commands` at `:7793`) @ `21fbda3f`. The server REST handler
+  `warp-server/router/handlers/public_api/agent_environments.go:48`
+  (`RegisterAgentEnvironmentRoutes`) registers only the GET route today — no
+  update/create/delete/setup-command handlers exist yet. GraphQL
+  `warp-server/graphql/v2/cloud_environment.graphqls:49` exposes
+  `setupCommands: [String!]` but is internal, not the documented public
+  contract.
+- Sync tool: `docs/.agents/skills/sync-openapi-spec/scripts/sync_openapi.py`
+  (`EXCLUDED_TAGS` at `:44` = `{memory_stores, harness-support}`;
+  `EXCLUDED_PATHS` at `:48`; `KNOWN_TAGS` at `:343` = `{agent, schedules}` ∪
+  excluded). Policy doc: `references/sync-policy.md`. Direction is
+  warp-server → docs; apply mode validates every `$ref` resolves before
+  writing (exit 3 on failure).
+
+*Design alternatives* (per decision point with more than one reasonable
+approach):
+- **REST vs GraphQL vs both for the public contract** — options:
+  (a) *REST only* (chosen): matches the existing `GET /agent/environments`
+  public surface, the OpenAPI/Scalar reference, and `docs.warp.dev/api`. The
+  server already wraps a GraphQL resolver for listing but exposes REST
+  publicly; adding REST precise-update ops keeps the documented contract
+  consistent and reviewable in one spec. (b) *GraphQL only*: would require a
+  new public GraphQL surface and a different docs rendering path; Scalar
+  renders OpenAPI/REST, so this would not flow through the existing sync. (c)
+  *Both*: doubles the documented surface and the cross-repo alignment cost for
+  no user-facing benefit today. → REST only.
+- **Where index semantics live** — options:
+  (a) *In the contract* (chosen): the documented operations carry index
+  parameters and explicit bounds, so CLI/server/docs agree on one shape (the
+  brief's cross-repo requirement). (b) *Contract is full-replacement only
+  (`PUT` the whole `setup_commands` list), CLI computes the final list*: simpler
+  contract but moves index semantics out of the shared contract, so the three
+  specs cannot "agree on the same index semantics" — rejected for this
+  multi-repo task. → contract carries index semantics.
+- **Endpoint shape** — **binding per warp-server's committed REST contract**
+  (the docs file mirrors it verbatim via the sync): a multi-verb sub-resource
+  under `/agent/environments/{uid}/setup-commands` (mounted at
+  `/api/v1/agent/environments/{uid}/setup-commands`): `GET` (list), `PUT`
+  (replace / clear-and-rebuild), `POST` (add — append when index omitted,
+  insert at `0..=len`), `PATCH /{index}` (edit by index), `DELETE /{index}`
+  (remove by index), `DELETE` (clear all). Alternatives weighed before
+  warp-server committed: (a) a single `PATCH` with an ordered `operations`
+  array body (insert/edit/remove/append/clear/replace) — fewer endpoints but a
+  less standard REST shape and a compound request body; (b) a whole-config
+  `PATCH /agent/environments/{uid}` with a setup-commands patch nested under
+  config — broader blast radius implying a general environment update
+  contract. warp-server chose the multi-verb sub-resource; the docs file
+  mirrors that exact surface, so the validation criteria below check for those
+  verbs and the `{uid}` path parameter.
+- **New tag or reuse `agent`** — options:
+  (a) *Reuse the `agent` tag* (proposed): the new operations flow through the
+  sync automatically (`agent` ∈ `KNOWN_TAGS`, path not in `EXCLUDED_PATHS`) —
+  no policy change needed. (b) *Introduce an `environments` tag*: would require
+  extending `KNOWN_TAGS`/`EXCLUDED_TAGS` and `references/sync-policy.md` or the
+  diff flags it with `!` for triage. → reuse `agent` unless the warp-server
+  spec introduces a new tag, in which case the sync policy MUST be updated
+  (criterion 2).
+
+*Proposed changes* (docs repo):
+1. **Regenerate** `developers/agent-api-openapi.yaml` by running
+   `scripts/sync_openapi.py --mode apply --source <updated warp-server
+   public_api/openapi.yaml> --target developers/agent-api-openapi.yaml` once
+   the warp-server canonical lands the setup-commands sub-resource. The
+   regenerated file adds the new paths — `/agent/environments/{uid}/setup-commands`
+   and `/agent/environments/{uid}/setup-commands/{index}` — the per-verb
+   operations (`GET`/`PUT`/`POST`/`PATCH`/`DELETE`), their request/response
+   schemas (e.g. add/replace/edit request bodies and the list response), and
+   the `Error`-referenced error responses — mirroring the canonical verbatim
+   for the included surface.
+2. **Sync policy** (only if needed): if the warp-server spec introduces a new
+   tag (not `agent`/`schedules`) or a path that should stay hidden, update
+   `EXCLUDED_TAGS`/`EXCLUDED_PATHS` in `scripts/sync_openapi.py` and record the
+   rationale in `references/sync-policy.md`. If the new ops reuse the `agent`
+   tag and are public, no policy change is required.
+3. **No hand-edits** to the generated YAML outside the sync tool's output; the
+   file remains a generated artifact so future syncs are clean.
+4. **Sequencing note (for the foreman/implementation):** the docs sync
+   `--mode apply` step requires a `warp-server/public_api/openapi.yaml` that
+   already contains the new operations. The docs implementation child therefore
+   runs the sync against the warp-server branch/commit that lands the contract
+   (or waits until that contract is merged). The docs PR may land in two phases:
+   (i) this spec file (+ any sync-policy update), (ii) the regenerated YAML
+   once the canonical source is available. Both phases land on this same PR
+   branch.
+
+*Open questions resolved* (each ambiguity and how it was settled; the
+warp-server spec is the source of truth for the exact contract, these are the
+docs-side assumptions that keep all three specs aligned — surfaced in the
+approval request for ben to confirm):
+- **Index base: zero-based.** Settled from the JSON array model
+  (`setup_commands: array of string`) and OpenAPI/JSON conventions; avoids
+  off-by-one translation between the API and the underlying model. The CLI may
+  display one-based indexes in help text, but the *contract* is zero-based and
+  all three specs agree on zero-based. *Assumption to confirm:* ben may prefer
+  one-based for CLI ergonomics — if so, the CLI maps one-based→zero-based at the
+  edge and the contract stays zero-based.
+- **Insert permits append-at-length: yes.** `POST` insert at `index == length`
+  appends and preserves order; an insert `index > length` is out of range.
+  Per warp-server's binding contract: edit/remove out of range → `404`; a bad
+  (malformed/negative) index → `400`. Settled as standard list-insert
+  semantics; supports `--insert-setup-command <len> <cmd>` as an append.
+- **Duplicate-command addressing: by index.** Setup commands may legitimately
+  repeat, so the precise ops address by index, not by text. The existing
+  text-based `--remove-setup-command` CLI flag is preserved for compatibility
+  and is translated client-side (find first text match → its index →
+  `DELETE /{index}`); the public contract is index-based only. Settled from the
+  ticket's "edit one setup command by index without resending" requirement.
+- **Public contract: REST.** Settled from the existing REST public surface and
+  the Scalar/OpenAPI docs pipeline; GraphQL stays internal. See Design
+  alternatives.
+- **Exact endpoint path/shape: binding per warp-server.** Multi-verb
+  sub-resource under `/agent/environments/{uid}/setup-commands` (mounted at
+  `/api/v1/...`): `GET` list, `PUT` replace/clear-and-rebuild, `POST` add
+  (append when index omitted, insert at `0..=len`), `PATCH /{index}` edit,
+  `DELETE /{index}` remove, `DELETE` clear. The docs file mirrors this exact
+  surface verbatim via the sync; the validation criteria check for these verbs
+  and the `{uid}` path parameter.
+
+*Risks / blast radius:*
+- The docs file is generated; a hand-edit would be overwritten on the next
+  sync. Mitigation: only change it via `sync_openapi.py --mode apply`.
+- If the warp-server contract introduces a new tag/path, the sync diff flags it
+  `!` and the docs PR must update the sync policy or the build/sync is blocked.
+  Mitigation: criterion 2 enforces zero `!` flags before merge.
+- Cross-repo drift: if the docs file diverges from the canonical (e.g. stale
+  schema names or index semantics), the Scalar reference would document a
+  contract the server doesn't implement. Mitigation: criterion 10 enforces
+  `--mode diff` shows the docs file equals the curated canonical subset.
+- The docs sync depends on the warp-server contract landing first; the docs PR
+  cannot be merged with a regenerated YAML until that source exists
+  (criterion 1 runs against the updated canonical).
+
+*Validation & verification criteria* (must ALL pass before merge of the docs
+PR; criteria 1–4 run against a `warp-server/public_api/openapi.yaml` that
+already contains the new setup-command operations):
+1. `python3 .agents/skills/sync-openapi-spec/scripts/sync_openapi.py --mode apply --source ../warp-server/public_api/openapi.yaml --target developers/agent-api-openapi.yaml` regenerates the docs file containing the new setup-command operation(s) and exits 0 with "All $refs resolve in the regenerated spec." (every `$ref` resolves). - verifies behavior #1, #2.
+2. `python3 .agents/skills/sync-openapi-spec/scripts/sync_openapi.py --mode diff --source ../warp-server/public_api/openapi.yaml --target developers/agent-api-openapi.yaml` reports **no `!` unclassified items**: the new operations either reuse the `agent` tag (no policy change) OR `EXCLUDED_TAGS`/`KNOWN_TAGS` in `scripts/sync_openapi.py` and `references/sync-policy.md` have been updated with a rationale for any new tag/path. - verifies the sync policy stays consistent.
+3. The regenerated `developers/agent-api-openapi.yaml` contains the setup-commands sub-resource the warp-server canonical commits: paths `/agent/environments/{uid}/setup-commands` and `/agent/environments/{uid}/setup-commands/{index}`, with `GET` (list), `PUT` (replace/clear-and-rebuild), `POST` (add; append when index omitted, insert at `0..=len`), `PATCH /{index}` (edit by index), `DELETE /{index}` (remove by index), and `DELETE` (clear all) operations — each with `bearerAuth` security, the appropriate request body schema, and `200`/`201`/`204`/`400`/`401`/`403`/`404`/`500` responses (error responses `$ref` `#/components/schemas/Error`). - verifies behavior #1, #2; checked by grepping the regenerated YAML for the committed operationIds/paths and schema names.
+4. The regenerated docs file documents the **zero-based** index semantics in the operation/schema `description` fields, matching the warp-server canonical verbatim: `POST` insert at `index == length` appends; edit (`PATCH /{index}`) / remove (`DELETE /{index}`) out of range → `404`; a bad (malformed/negative) index → `400`; duplicate command text allowed and addressed by index. - verifies behavior #3, #4; checked by reading the regenerated schema descriptions and confirming they equal the canonical's.
+5. `npm run build` succeeds (Astro picks up the regenerated YAML and Scalar parses it at build time). - verifies behavior #1, #6; the docs repo's documented build check.
+6. (Recommended when schemas changed) `npx @redocly/cli lint developers/agent-api-openapi.yaml` passes with no errors. - belt-and-braces OpenAPI lint.
+7. No regressions to the existing public surface: the regenerated docs file still contains `GET /agent/environments` (`operationId: listEnvironments`) and the `CloudEnvironmentConfig` schema with its `setup_commands` array field, unchanged; `--mode diff` shows the new operations as **additions** only (no removals of existing public paths/schemas). - verifies behavior #5.
+8. The docs PR records the warp-server source commit SHA used for the sync and the count of paths/schemas added/modified (per the sync-openapi-spec skill's reporting step). - traceability of the generated artifact to its source.
+9. Cross-repo alignment: the docs sub-resource paths (`/agent/environments/{uid}/setup-commands` and `.../{index}`), the `{uid}` path parameter name, the per-verb operationIds, request/response schema `$ref` names, HTTP status codes (`404` out-of-range edit/remove, `400` bad index), and zero-based index semantics exactly match `warp-server/public_api/openapi.yaml`. - verifies the three specs agree on one contract; checked by `--mode diff` reporting the docs file equals the curated subset of the canonical (no docs-only divergence).
+10. After deploy, `docs.warp.dev/api` (Scalar) and `docs.warp.dev/openapi.json` expose the new operations. For the PR itself, verify via the `npm run build` output that the new path is present in the built spec; live deploy verification is post-merge. - verifies behavior #1, #6.
diff --git a/developers/agent-api-openapi.yaml b/developers/agent-api-openapi.yaml
index 870bee047..e49cbe321 100644
--- a/developers/agent-api-openapi.yaml
+++ b/developers/agent-api-openapi.yaml
@@ -1197,6 +1197,325 @@ paths:
             application/json:
               schema:
                 $ref: '#/components/schemas/Error'
+  '/agent/environments/{uid}/setup-commands':
+    get:
+      summary: List environment setup commands
+      description: |
+        Return the environment's current ordered `setup_commands` as a JSON array,
+        0-indexed in array order. An environment with no setup commands returns
+        an empty array. Duplicate command text is permitted: each entry is a
+        distinct element addressed by its zero-based index. Requires update
+        permission on the environment.
+      operationId: listEnvironmentSetupCommands
+      tags:
+        - agent
+      security:
+        - bearerAuth: []
+      parameters:
+        - $ref: '#/components/parameters/EnvironmentUID'
+      responses:
+        '200':
+          description: The environment's ordered setup commands
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/SetupCommandsResponse'
+        '401':
+          description: Authentication required
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '403':
+          description: No permission to update the environment
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '404':
+          description: Environment not found
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '500':
+          description: Internal server error
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+    put:
+      summary: Replace environment setup commands
+      description: |
+        Replace the environment's entire `setup_commands` list with the provided
+        array (the "clear and rebuild" operation). An empty array or an omitted
+        field clears the list. The resulting list equals the request array in
+        order. Duplicate command text is permitted and preserved in order;
+        entries are addressed by their zero-based index. Requires update
+        permission on the environment.
+      operationId: replaceEnvironmentSetupCommands
+      tags:
+        - agent
+      security:
+        - bearerAuth: []
+      parameters:
+        - $ref: '#/components/parameters/EnvironmentUID'
+      requestBody:
+        required: true
+        content:
+          application/json:
+            schema:
+              $ref: '#/components/schemas/ReplaceSetupCommandsRequest'
+      responses:
+        '200':
+          description: The replaced setup commands
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/SetupCommandsResponse'
+        '400':
+          description: Invalid setup command(s) or list size
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '401':
+          description: Authentication required
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '403':
+          description: No permission to update the environment
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '404':
+          description: Environment not found
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '500':
+          description: Internal server error
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+    post:
+      summary: Add or insert an environment setup command
+      description: |
+        Append a command to the end of `setup_commands` when `index` is omitted.
+        When `index` is provided and `0 <= index <= len`, insert the command at
+        that position, shifting the element previously at `index` and all later
+        elements right by one; `index == len` appends. `index < 0` or
+        `index > len` is a 400. Duplicate command text is allowed: the new
+        command may equal an existing entry, since list entries are addressed by
+        their zero-based index, not by text. Requires update permission on the
+        environment.
+      operationId: addEnvironmentSetupCommand
+      tags:
+        - agent
+      security:
+        - bearerAuth: []
+      parameters:
+        - $ref: '#/components/parameters/EnvironmentUID'
+      requestBody:
+        required: true
+        content:
+          application/json:
+            schema:
+              $ref: '#/components/schemas/AddSetupCommandRequest'
+      responses:
+        '200':
+          description: The updated setup commands
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/SetupCommandsResponse'
+        '400':
+          description: Invalid index or setup command
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '401':
+          description: Authentication required
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '403':
+          description: No permission to update the environment
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '404':
+          description: Environment not found
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '500':
+          description: Internal server error
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+    delete:
+      summary: Clear all environment setup commands
+      description: |
+        Remove every setup command from the environment; the resulting list is
+        empty. Requires update permission on the environment.
+      operationId: clearEnvironmentSetupCommands
+      tags:
+        - agent
+      security:
+        - bearerAuth: []
+      parameters:
+        - $ref: '#/components/parameters/EnvironmentUID'
+      responses:
+        '204':
+          description: Setup commands cleared
+        '401':
+          description: Authentication required
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '403':
+          description: No permission to update the environment
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '404':
+          description: Environment not found
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '500':
+          description: Internal server error
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+  '/agent/environments/{uid}/setup-commands/{index}':
+    patch:
+      summary: Edit an environment setup command by index
+      description: |
+        Replace only the command at `index` with the provided `command`, leaving
+        all other entries and the list length unchanged. `index` is 0-based and
+        must reference an existing entry (`0 <= index < len`); an out-of-range
+        index returns 404 and a non-integer/negative index returns 400.
+        Duplicate command text is allowed: editing index `i` changes only that
+        slot, so any other entry with the same text is left untouched.
+        Requires update permission on the environment.
+      operationId: updateEnvironmentSetupCommand
+      tags:
+        - agent
+      security:
+        - bearerAuth: []
+      parameters:
+        - $ref: '#/components/parameters/EnvironmentUID'
+        - $ref: '#/components/parameters/SetupCommandIndex'
+      requestBody:
+        required: true
+        content:
+          application/json:
+            schema:
+              $ref: '#/components/schemas/UpdateSetupCommandRequest'
+      responses:
+        '200':
+          description: The updated setup commands
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/SetupCommandsResponse'
+        '400':
+          description: Invalid index or setup command
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '401':
+          description: Authentication required
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '403':
+          description: No permission to update the environment
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '404':
+          description: Environment or setup command index not found
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '500':
+          description: Internal server error
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+    delete:
+      summary: Remove an environment setup command by index
+      description: |
+        Remove the command at `index`, shifting later elements left by one; the
+        list length decreases by one. `index` is 0-based and must reference an
+        existing entry (`0 <= index < len`); an out-of-range index returns 404
+        and a non-integer/negative index returns 400. Duplicate command text is
+        allowed: removing index `i` affects only that slot, so any other entry
+        with the same text is left untouched. Requires update permission on the
+        environment.
+      operationId: removeEnvironmentSetupCommand
+      tags:
+        - agent
+      security:
+        - bearerAuth: []
+      parameters:
+        - $ref: '#/components/parameters/EnvironmentUID'
+        - $ref: '#/components/parameters/SetupCommandIndex'
+      responses:
+        '204':
+          description: Setup command removed
+        '400':
+          description: Invalid index
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '401':
+          description: Authentication required
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '403':
+          description: No permission to update the environment
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '404':
+          description: Environment or setup command index not found
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
+        '500':
+          description: Internal server error
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/Error'
   /agent/models:
     get:
       summary: List available models
@@ -1577,6 +1896,26 @@ components:
       scheme: bearer
       description: |
         Authentication via a Warp API key.
+  parameters:
+    EnvironmentUID:
+      name: uid
+      in: path
+      description: The unique identifier of the cloud environment.
+      required: true
+      schema:
+        type: string
+    SetupCommandIndex:
+      name: index
+      in: path
+      description: |
+        Zero-based index of a setup command within the environment's
+        `setup_commands` array. Must be a non-negative integer; an
+        out-of-range integer returns 404 and a non-integer or negative
+        value returns 400.
+      required: true
+      schema:
+        type: integer
+        minimum: 0
   schemas:
     RunAgentRequest:
       type: object
@@ -2931,6 +3270,85 @@ components:
           description: Shell commands to run during environment setup
         providers:
           $ref: '#/components/schemas/ProvidersConfig'
+    SetupCommandsResponse:
+      type: object
+      description: |
+        The environment's ordered setup commands. `setup_commands` is the
+        current list in array order (0-indexed); an environment with no setup
+        commands returns an empty array. Duplicate command text is permitted:
+        each list entry is a distinct element addressed by its zero-based
+        index, so editing or removing index `i` changes only that slot.
+      required:
+        - setup_commands
+      properties:
+        setup_commands:
+          type: array
+          maxItems: 100
+          items:
+            type: string
+            minLength: 1
+            maxLength: 4096
+          description: The environment's ordered setup commands
+    ReplaceSetupCommandsRequest:
+      type: object
+      description: |
+        Request body for replacing an environment's entire setup_commands list
+        (the "clear and rebuild" operation). An empty array or an omitted
+        field clears the list. The resulting list equals the request array in
+        order. Duplicate command text is permitted and preserved in order;
+        entries are addressed by their zero-based index.
+      properties:
+        setup_commands:
+          type: array
+          maxItems: 100
+          items:
+            type: string
+            minLength: 1
+            maxLength: 4096
+          description: The full replacement list of setup commands
+    AddSetupCommandRequest:
+      type: object
+      description: |
+        Request body for adding or inserting a single setup command. When
+        `index` is omitted the command is appended; when `index` is provided
+        and `0 <= index <= len` the command is inserted at that position
+        (`index == len` appends). `index < 0` or `index > len` is a 400.
+        Duplicate command text is permitted: the new command may equal an
+        existing entry, since each entry is addressed by its zero-based index.
+      required:
+        - command
+      properties:
+        command:
+          type: string
+          minLength: 1
+          maxLength: 4096
+          x-oapi-codegen-extra-tags:
+            binding: required
+          description: The setup command to add or insert.
+        index:
+          type: integer
+          minimum: 0
+          x-go-type-skip-optional-pointer: false
+          description: |
+            Optional 0-based position to insert at. Omit to append. Must
+            satisfy `0 <= index <= len`; `index == len` appends.
+    UpdateSetupCommandRequest:
+      type: object
+      description: |
+        Request body for editing a single setup command by index. Replaces only
+        the command at the path `index` with the provided `command`. Duplicate
+        command text is permitted: editing index `i` changes only that slot and
+        leaves any other entry with the same text untouched.
+      required:
+        - command
+      properties:
+        command:
+          type: string
+          minLength: 1
+          maxLength: 4096
+          x-oapi-codegen-extra-tags:
+            binding: required
+          description: The replacement setup command.
     ProvidersConfig:
       type: object
       description: Optional cloud provider configurations for automatic auth