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Nextstrain BA.2.86 Tree Consensus Mutations

Status: Open.

#50 In neherlab/nextclade_data_workflows;

· ryhisner opened on Jun 3, 2026

HIV

Status: Open.

#48 In neherlab/nextclade_data_workflows;

· AndreaAguadoM opened on Jan 28, 2025

Rename gene to cds

Status: Open.

#46 In neherlab/nextclade_data_workflows;

· corneliusroemer opened on Jan 9, 2024

Don't count nucleotides 0-100 towards divergence

Status: Open.

#40 In neherlab/nextclade_data_workflows;

· corneliusroemer opened on Mar 19, 2023

ENH: Attach recombinants at most recent common ancestor

enhancementNew feature or requestNew feature or request

SARS-CoV-2

Status: Open.

#39 In neherlab/nextclade_data_workflows;

· corneliusroemer opened on Mar 18, 2023

ENH: Add escape score etc as colorings

Status: Open.

#29 In neherlab/nextclade_data_workflows;

· corneliusroemer opened on Oct 17, 2022

MPXV: Add reversions to virus_properties in B.1 build

Status: Open.

#25 In neherlab/nextclade_data_workflows;

· corneliusroemer opened on Sep 26, 2022

MPXV: Remove duplicates (after masking) to reduce tree size

Status: Open.

#24 In neherlab/nextclade_data_workflows;

· corneliusroemer opened on Sep 26, 2022

Prohibit reversions by default, make allowlist for real reversions

Status: Open.

#19 In neherlab/nextclade_data_workflows;

· corneliusroemer opened on Aug 23, 2022

Auto generate constraint.nwk from pango alias file, allow additional resolution

Status: Open.

#18 In neherlab/nextclade_data_workflows;

· corneliusroemer opened on Jul 22, 2022

Use pango defining mutations to improve synthetic lineage curation

enhancementNew feature or requestNew feature or request

Status: Open.

#17 In neherlab/nextclade_data_workflows;

· corneliusroemer opened on Jul 22, 2022

Request: Add vaccine strains and clade defining viruses to NextClade flu dataset

Status: Open.

#11 In neherlab/nextclade_data_workflows;

· ammaraziz opened on Jan 19, 2022